☰ Navigation Tabs
Photoconverted red fluorescent protein DendRFP
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 293 0.2 M Mg formate, 20% PEG 3350
Crystal Properties Matthews coefficient Solvent content 2.16 43.18
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 57.423 α = 89.88 b = 69.521 β = 89.94 c = 124.481 γ = 65.57
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 300 mm CCD 2015-03-12 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 22-ID 1.0 APS 22-ID
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.14 30 99.4 0.053 0.061 0.032 9.9 3.6 95569
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.14 2.22 98.6 0.576 0.684 0.366 0.747 3.3 9500
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION THROUGHOUT 2.14 29.87 88469 1744 93.24 0.1961 0.1945 0.1957 0.2793 0.2823 RANDOM 27.569
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1.04 2.34 -1.31 -1.33 2.95 0.29
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.455 r_dihedral_angle_3_deg 19.319 r_dihedral_angle_4_deg 18.196 r_dihedral_angle_1_deg 9.284 r_angle_other_deg 3.815 r_mcangle_it 3.682 r_mcbond_it 2.383 r_mcbond_other 2.383 r_angle_refined_deg 2.058 r_chiral_restr 0.113
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.455 r_dihedral_angle_3_deg 19.319 r_dihedral_angle_4_deg 18.196 r_dihedral_angle_1_deg 9.284 r_angle_other_deg 3.815 r_mcangle_it 3.682 r_mcbond_it 2.383 r_mcbond_other 2.383 r_angle_refined_deg 2.058 r_chiral_restr 0.113 r_bond_refined_d 0.02 r_gen_planes_other 0.012 r_gen_planes_refined 0.01 r_bond_other_d
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 14582 Nucleic Acid Atoms Solvent Atoms 643 Heterogen Atoms 29
Software Software Software Name Purpose REFMAC refinement SCALEPACK data scaling PDB_EXTRACT data extraction HKL-2000 data reduction MOLREP phasing