☰ Navigation Tabs
1.8 Angstrom Crystal Structure of ATP-binding Component of Fused Lipid Transporter Subunits of ABC superfamily from Haemophilus influenzae.
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2GHI
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 6.5 295 Protein: 8.5 mg/ml, 0.01M Tris-HCL (pH 8.3);
Screen: JCSG+ (E2), 0.2M Sodium chloride, 0.1M Sodium cacodylate (pH 6.5), 2M Ammonium sulfate;
Cryo: 1:1 (screen solution) : (50% Sucrose).
Crystal Properties Matthews coefficient Solvent content 2.39 48.5
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 95.237 α = 90 b = 95.237 β = 90 c = 60.87 γ = 90
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 300 mm CCD 2015-10-12 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 21-ID-G 0.98756 APS 21-ID-G
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.8 30 99.8 0.048 0.048 32.8 7.5 50720 -3 35.2
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.8 1.83 100 0.64 3.4 7.5
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2GHI 1.8 29.46 47918 2598 99.73 0.1727 0.17104 0.20394 0.2348 RANDOM 42.179
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.45 -0.45 0.91
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 29.33 r_dihedral_angle_4_deg 11.27 r_dihedral_angle_3_deg 9.72 r_long_range_B_refined 7.527 r_long_range_B_other 7.455 r_scangle_other 3.686 r_dihedral_angle_1_deg 3.162 r_mcangle_it 2.524 r_mcangle_other 2.524 r_scbond_it 2.366
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 29.33 r_dihedral_angle_4_deg 11.27 r_dihedral_angle_3_deg 9.72 r_long_range_B_refined 7.527 r_long_range_B_other 7.455 r_scangle_other 3.686 r_dihedral_angle_1_deg 3.162 r_mcangle_it 2.524 r_mcangle_other 2.524 r_scbond_it 2.366 r_scbond_other 2.366 r_mcbond_it 1.639 r_mcbond_other 1.626 r_angle_refined_deg 1.405 r_angle_other_deg 0.85 r_chiral_restr 0.092 r_gen_planes_refined 0.022 r_gen_planes_other 0.018 r_bond_refined_d 0.009 r_bond_other_d 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3871 Nucleic Acid Atoms Solvent Atoms 305 Heterogen Atoms 117
Software Software Software Name Purpose REFMAC refinement HKL-3000 data reduction HKL-3000 data scaling BALBES phasing BLU-MAX data collection