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RORy in complex with inverse agonist 3.
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 4ZOM
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 5.5 298 21% PEG3350, 0.2M Ammonium Acetate, 0.1M BisTRIS pH 5.5
Crystal Properties Matthews coefficient Solvent content 2.21 44.32
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 125.559 α = 90 b = 56.413 β = 124.67 c = 77.922 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 225 mm CCD 2010-08-17 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 31-ID 0.98 APS 31-ID
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.803 50 98.5 0.104 0.142 0.095 7.2 2.1 10930
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.803 2.88 98.1 0.479 0.654 0.442 0.674 2.1 558
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 4ZOM 2.803 50 9761 1168 97.54 0.2295 0.2231 0.2253 0.2842 0.2821 RANDOM 45.458
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.37 -0.15 0.34 0.12
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.51 r_dihedral_angle_3_deg 17.947 r_dihedral_angle_4_deg 16.371 r_dihedral_angle_1_deg 4.994 r_mcangle_it 3.852 r_angle_other_deg 3.218 r_mcbond_it 2.377 r_mcbond_other 2.37 r_angle_refined_deg 1.595 r_chiral_restr 0.113
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.51 r_dihedral_angle_3_deg 17.947 r_dihedral_angle_4_deg 16.371 r_dihedral_angle_1_deg 4.994 r_mcangle_it 3.852 r_angle_other_deg 3.218 r_mcbond_it 2.377 r_mcbond_other 2.37 r_angle_refined_deg 1.595 r_chiral_restr 0.113 r_bond_refined_d 0.011 r_gen_planes_refined 0.005 r_bond_other_d 0.002 r_gen_planes_other 0.002
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3452 Nucleic Acid Atoms Solvent Atoms 22 Heterogen Atoms 72
Software Software Software Name Purpose REFMAC refinement SCALA data scaling PDB_EXTRACT data extraction Coot model building HKL-2000 data reduction PHASER phasing