☰ Navigation Tabs
X-ray structure of cisplatin-encapsulated horse spleen apoferritin
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7.4 293 0.6-0.8 M (NH4)2SO4, 0.1 M Tris pH 7.4-7.7, 50-60 mM CdSO4
Crystal Properties Matthews coefficient Solvent content 3.1 60.36
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 180.899 α = 90 b = 180.899 β = 90 c = 180.899 γ = 90
Symmetry Space Group F 4 3 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 2M 2015-07-22 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ELETTRA BEAMLINE 5.2R 1.065 ELETTRA 5.2R
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.45 104.44 100 0.073 17.2 11.3 45325
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.45 1.53 99.8 0.569 3.5 8.3
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.45 104.44 43127 2182 99.92 0.14666 0.14538 0.1454 0.17251 0.1721 RANDOM 18.307
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.025 r_dihedral_angle_4_deg 18.319 r_dihedral_angle_3_deg 12.759 r_long_range_B_other 8.88 r_long_range_B_refined 8.879 r_scangle_other 5.9 r_dihedral_angle_1_deg 5.474 r_scbond_it 4.137 r_scbond_other 3.972 r_mcangle_other 3.27
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.025 r_dihedral_angle_4_deg 18.319 r_dihedral_angle_3_deg 12.759 r_long_range_B_other 8.88 r_long_range_B_refined 8.879 r_scangle_other 5.9 r_dihedral_angle_1_deg 5.474 r_scbond_it 4.137 r_scbond_other 3.972 r_mcangle_other 3.27 r_mcangle_it 3.265 r_angle_refined_deg 2.553 r_mcbond_it 2.123 r_mcbond_other 2.115 r_angle_other_deg 1.112 r_chiral_restr 0.15 r_bond_refined_d 0.03 r_gen_planes_refined 0.013 r_bond_other_d 0.003 r_gen_planes_other 0.002 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1386 Nucleic Acid Atoms Solvent Atoms 204 Heterogen Atoms 36
Software Software Software Name Purpose REFMAC refinement MAR345dtb data collection SCALA data scaling PHASER phasing