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The three-dimensional structure of Clostridium absonum 7alpha-hydroxysteroid dehydrogenase
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 293 2.0M Ammonium citrate tribasic, 0.1M BIS-TRIS propane, PH 7.0
Crystal Properties Matthews coefficient Solvent content 2.19 43.81
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 67.18 α = 90 b = 69.68 β = 90 c = 220.39 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 IMAGE PLATE RIGAKU RAXIS IV++ 2013-12-04 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU FR-E+ SUPERBRIGHT 1.5419
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.726 110.195 98.3 7.1 6.7 69768
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION THROUGHOUT 2 49.58 66141 3540 98.22 0.18411 0.1821 0.1894 0.22189 0.2262 RANDOM 15.397
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.03 -0.04
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.66 r_dihedral_angle_4_deg 16.616 r_dihedral_angle_3_deg 14.603 r_long_range_B_refined 6.645 r_long_range_B_other 6.458 r_dihedral_angle_1_deg 5.396 r_scangle_other 4.328 r_scbond_it 2.703 r_scbond_other 2.703 r_mcangle_it 1.871
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.66 r_dihedral_angle_4_deg 16.616 r_dihedral_angle_3_deg 14.603 r_long_range_B_refined 6.645 r_long_range_B_other 6.458 r_dihedral_angle_1_deg 5.396 r_scangle_other 4.328 r_scbond_it 2.703 r_scbond_other 2.703 r_mcangle_it 1.871 r_mcangle_other 1.871 r_angle_refined_deg 1.565 r_mcbond_it 1.196 r_mcbond_other 1.195 r_angle_other_deg 1.082 r_chiral_restr 0.085 r_bond_refined_d 0.019 r_gen_planes_refined 0.006 r_bond_other_d 0.003 r_gen_planes_other 0.002 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 7914 Nucleic Acid Atoms Solvent Atoms 995 Heterogen Atoms 352
Software Software Software Name Purpose REFMAC refinement SCALA data scaling PHASER phasing