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Crystal Structure of chromodomain of CBX7 in complex with inhibitor UNC3866
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 293 20% PEG 3350, 0.2 M ammonium formate
Crystal Properties Matthews coefficient Solvent content 2.19 43.78
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 40.286 α = 90 b = 40.286 β = 90 c = 82.092 γ = 90
Symmetry Space Group P 41 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD RIGAKU SATURN A200 2014-04-16 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU FR-E SUPERBRIGHT 1.5418
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.6 36.17 99.9 0.039 0.04 0.011 1 51.8 12.4 9487
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.6 1.63 98.2 0.187 0.196 0.056 0.979 13.8 12.3 448
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION THROUGHOUT 1.6 36.17 8760 671 99.7 0.2382 0.2366 0.2491 0.2599 0.2693 12.164
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.04 0.04 -0.08
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 29.532 r_dihedral_angle_4_deg 13.592 r_dihedral_angle_3_deg 13.315 r_dihedral_angle_1_deg 5.958 r_mcangle_it 1.945 r_angle_refined_deg 1.589 r_mcbond_it 1.21 r_mcbond_other 1.18 r_angle_other_deg 0.907 r_chiral_restr 0.097
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 29.532 r_dihedral_angle_4_deg 13.592 r_dihedral_angle_3_deg 13.315 r_dihedral_angle_1_deg 5.958 r_mcangle_it 1.945 r_angle_refined_deg 1.589 r_mcbond_it 1.21 r_mcbond_other 1.18 r_angle_other_deg 0.907 r_chiral_restr 0.097 r_bond_refined_d 0.015 r_gen_planes_refined 0.008 r_bond_other_d 0.003 r_gen_planes_other 0.002
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 470 Nucleic Acid Atoms Solvent Atoms 48 Heterogen Atoms 34
Software Software Software Name Purpose Aimless data scaling REFMAC refinement PDB_EXTRACT data extraction PHASER phasing