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Crystal structure of beta-ketoacyl-acyl carrier protein reductase (FabG)(Q152A) from Vibrio cholerae
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7 289 0.1M Tris, 20% PEG1000
Crystal Properties Matthews coefficient Solvent content 2.16 43.13
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 63.995 α = 90 b = 63.995 β = 90 c = 190.474 γ = 120
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 210r Mirrors 2015-10-16 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 19-BM 0.979 APS 19-BM
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.55 50 99.9 0.097 0.108 0.047 6.4 5 14503
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.55 2.59 100 0.755 0.844 0.374 0.659 5 698
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2.55 47.9 13264 667 96.94 0.2084 0.2061 0.2054 0.2548 0.2515 RANDOM 44.008
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -6.11 -6.11 12.22
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.851 r_dihedral_angle_3_deg 15.206 r_dihedral_angle_4_deg 11.299 r_dihedral_angle_1_deg 6.185 r_angle_refined_deg 1.515 r_mcangle_it 1.353 r_angle_other_deg 1.069 r_mcbond_it 0.764 r_mcbond_other 0.763 r_chiral_restr 0.072
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.851 r_dihedral_angle_3_deg 15.206 r_dihedral_angle_4_deg 11.299 r_dihedral_angle_1_deg 6.185 r_angle_refined_deg 1.515 r_mcangle_it 1.353 r_angle_other_deg 1.069 r_mcbond_it 0.764 r_mcbond_other 0.763 r_chiral_restr 0.072 r_bond_refined_d 0.011 r_gen_planes_refined 0.007 r_bond_other_d 0.002 r_gen_planes_other 0.002
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3211 Nucleic Acid Atoms Solvent Atoms 49 Heterogen Atoms 6
Software Software Software Name Purpose HKL-3000 data collection HKL-3000 data scaling MOLREP phasing REFMAC refinement PDB_EXTRACT data extraction HKL-3000 data reduction HKL-3000 phasing