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RORy in complex with T090131718 and Coactivator peptide EBI96
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 3L0L
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 7 298 1.0M Na Acetate/0.2M NaSCN/0.1M TRIS pH 7.0
Crystal Properties Matthews coefficient Solvent content 2.68 54.02
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 63.139 α = 90 b = 63.139 β = 90 c = 160.441 γ = 90
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 225 mm CCD 2010-04-04 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 31-ID 0.98 APS 31-ID
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.58 63.14 100 0.136 0.136 8.8 7.4 19787
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.58 2.72 100 0.912 0.912 0.8 7.4 2891
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 3L0L 2.58 63.14 18768 968 99.94 0.182 0.1793 0.1841 0.2308 0.2315 RANDOM 46.393
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.11 0.11 -0.23
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.671 r_dihedral_angle_4_deg 21.843 r_dihedral_angle_3_deg 18.181 r_dihedral_angle_1_deg 5.346 r_mcangle_it 4.133 r_mcbond_it 2.713 r_mcbond_other 2.709 r_angle_refined_deg 2.074 r_angle_other_deg 1.152 r_chiral_restr 0.133
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.671 r_dihedral_angle_4_deg 21.843 r_dihedral_angle_3_deg 18.181 r_dihedral_angle_1_deg 5.346 r_mcangle_it 4.133 r_mcbond_it 2.713 r_mcbond_other 2.709 r_angle_refined_deg 2.074 r_angle_other_deg 1.152 r_chiral_restr 0.133 r_bond_refined_d 0.019 r_gen_planes_refined 0.009 r_bond_other_d 0.002 r_gen_planes_other 0.002
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4163 Nucleic Acid Atoms Solvent Atoms 32 Heterogen Atoms 62
Software Software Software Name Purpose REFMAC refinement SCALA data scaling PDB_EXTRACT data extraction HKL-2000 data reduction MOLREP phasing