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Crystal structure of a surface pocket creating mutant (W6A) of an alkali thermostable GH10 xylanase from Bacillus sp. NG-27
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 293 0.1M NaCl, 0.16M MgCl2, 0.05M Tris HCl pH 8.5, 20% PEG 8000
Crystal Properties Matthews coefficient Solvent content 2.27 45.91
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 54.99 α = 90 b = 76.6 β = 90 c = 176.49 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 225 mm CCD 2012-05-29 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE BM14 0.82656 ESRF BM14
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Rrim I (All) Rpim I (All) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.674 88.245 99.8 0.077 0.085 0.035 14.7 5.7 86625 86625
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Rpim I (All) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.67 1.76 99.3 0.421 0.421 0.198 1.7 5.3 12428
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION THROUGHOUT 1.674 88.245 82205 4338 99.73 0.1591 0.1576 0.1711 0.1873 0.2003 RANDOM 16.887
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.83 -0.77 -0.06
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.222 r_dihedral_angle_4_deg 14.138 r_dihedral_angle_3_deg 11.575 r_dihedral_angle_1_deg 5.872 r_angle_refined_deg 1.621 r_mcangle_it 1.559 r_mcbond_it 0.975 r_mcbond_other 0.975 r_angle_other_deg 0.87 r_chiral_restr 0.105
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.222 r_dihedral_angle_4_deg 14.138 r_dihedral_angle_3_deg 11.575 r_dihedral_angle_1_deg 5.872 r_angle_refined_deg 1.621 r_mcangle_it 1.559 r_mcbond_it 0.975 r_mcbond_other 0.975 r_angle_other_deg 0.87 r_chiral_restr 0.105 r_bond_refined_d 0.014 r_gen_planes_refined 0.009 r_bond_other_d 0.003 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 5772 Nucleic Acid Atoms Solvent Atoms 442 Heterogen Atoms 33
Software Software Software Name Purpose SCALA data scaling REFMAC refinement PDB_EXTRACT data extraction SCALA data reduction PHASER phasing