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Aerococcus viridans L-lactate oxidase Y215F mutant
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7 298 30% PEG, 50 mM Tris-HCl, 50 mM pyruvate
Crystal Properties Matthews coefficient Solvent content 2.23 44.91
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 107.346 α = 90 b = 119.184 β = 107.52 c = 119.56 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315r 2011-12-15 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SSRL BEAMLINE BL7-1 0.97946 SSRL BL7-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.6 40 99.3 0.077 14.7 3.75 87748
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.6 2.74 96.8 0.323 4.8 3.73
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION THROUGHOUT 2.6 39.75 85084 2637 99.28 0.18382 0.18191 0.1891 0.24596 0.2478 RANDOM 24.923
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.01 -0.01
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.75 r_dihedral_angle_3_deg 16.139 r_dihedral_angle_4_deg 14.101 r_dihedral_angle_1_deg 6.436 r_long_range_B_refined 3.977 r_long_range_B_other 3.977 r_scangle_other 2.454 r_mcangle_it 2.26 r_mcangle_other 2.259 r_angle_refined_deg 1.502
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.75 r_dihedral_angle_3_deg 16.139 r_dihedral_angle_4_deg 14.101 r_dihedral_angle_1_deg 6.436 r_long_range_B_refined 3.977 r_long_range_B_other 3.977 r_scangle_other 2.454 r_mcangle_it 2.26 r_mcangle_other 2.259 r_angle_refined_deg 1.502 r_scbond_it 1.481 r_scbond_other 1.48 r_mcbond_it 1.387 r_mcbond_other 1.387 r_angle_other_deg 0.822 r_chiral_restr 0.08 r_bond_refined_d 0.012 r_gen_planes_refined 0.006 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 22333 Nucleic Acid Atoms Solvent Atoms 268 Heterogen Atoms 296
Software Software Software Name Purpose REFMAC refinement XDS data reduction SCALA data scaling PHASER phasing