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Wild type I-SmaMI in the space group of C121
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 4LOX
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 7.5 298 20% PEG8K, HEPES
Crystal Properties Matthews coefficient Solvent content 2.65 53.59
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 148.327 α = 90 b = 58.23 β = 96.08 c = 42.046 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD RIGAKU SATURN 70 2013-09-04 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU MICROMAX-007 HF 1.54
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.64 27.1 98.5 0.05 22 3.7 10491 1 1 21.2
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.64 2.73 87 0.149 7.5 3.1
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 4LOX 2.65 27.1 9875 495 98.74 0.17919 0.17521 0.1824 0.2646 0.2631 RANDOM 33.103
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.34 1.46 0.99 -1.6
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.844 r_dihedral_angle_4_deg 18.934 r_dihedral_angle_3_deg 18.041 r_dihedral_angle_1_deg 8.206 r_long_range_B_refined 3.604 r_long_range_B_other 3.603 r_mcangle_it 2.284 r_mcangle_other 2.283 r_angle_refined_deg 2.105 r_scangle_other 1.782
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.844 r_dihedral_angle_4_deg 18.934 r_dihedral_angle_3_deg 18.041 r_dihedral_angle_1_deg 8.206 r_long_range_B_refined 3.604 r_long_range_B_other 3.603 r_mcangle_it 2.284 r_mcangle_other 2.283 r_angle_refined_deg 2.105 r_scangle_other 1.782 r_mcbond_it 1.283 r_mcbond_other 1.282 r_angle_other_deg 1.098 r_scbond_it 0.997 r_scbond_other 0.997 r_chiral_restr 0.117 r_bond_refined_d 0.019 r_gen_planes_refined 0.009 r_bond_other_d 0.002 r_gen_planes_other 0.002 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2357 Nucleic Acid Atoms Solvent Atoms 84 Heterogen Atoms 16
Software Software Software Name Purpose REFMAC refinement HKL-2000 data reduction SCALEPACK data scaling PHASER phasing