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Crystal structure of phosphatidylinositol-4-phosphate 5-kinase
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 277 peg
Crystal Properties Matthews coefficient Solvent content 3.58 71.74
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 87.928 α = 90 b = 87.928 β = 90 c = 156.462 γ = 90
Symmetry Space Group P 43 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315 2014-06-15 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON NSLS BEAMLINE X29A 0.987 NSLS X29A
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 3.3 40 99.5 9.9 9.3 9831 9831
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION THROUGHOUT 3.3 40 9331 470 99.55 0.2074 0.204 0.2723 0.2661 RANDOM 96.349
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 3.26 3.26 -6.51
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.103 r_dihedral_angle_3_deg 22.4 r_dihedral_angle_4_deg 18.258 r_mcangle_it 11.362 r_dihedral_angle_1_deg 7.787 r_mcbond_it 7.347 r_mcbond_other 7.343 r_angle_refined_deg 1.746 r_angle_other_deg 0.897 r_chiral_restr 0.085
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.103 r_dihedral_angle_3_deg 22.4 r_dihedral_angle_4_deg 18.258 r_mcangle_it 11.362 r_dihedral_angle_1_deg 7.787 r_mcbond_it 7.347 r_mcbond_other 7.343 r_angle_refined_deg 1.746 r_angle_other_deg 0.897 r_chiral_restr 0.085 r_bond_refined_d 0.012 r_gen_planes_refined 0.007 r_bond_other_d 0.002 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2268 Nucleic Acid Atoms Solvent Atoms 3 Heterogen Atoms 33
Software Software Software Name Purpose REFMAC refinement PDB_EXTRACT data extraction HKL-3000 data reduction Coot model building