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Crystal structure of Phosphatidylinositol-4-phosphate 5-kinase
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 277 Peg
Crystal Properties Matthews coefficient Solvent content 3.62 71.45
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 88.931 α = 90 b = 88.931 β = 90 c = 154.57 γ = 90
Symmetry Space Group P 43 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315 2014-06-15 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON NSLS BEAMLINE X29A 0.987 NSLS X29A
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 3.1 40 100 11.3 9.3 11844 11844
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION THROUGHOUT 3.1 39.89 11256 562 99.65 0.2129 0.2101 0.2088 0.2728 0.2725 RANDOM 82.785
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1.14 1.14 -2.28
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.994 r_dihedral_angle_3_deg 23.614 r_dihedral_angle_4_deg 20.996 r_mcangle_it 11.357 r_scbond_it 9.172 r_mcbond_it 7.599 r_dihedral_angle_1_deg 6.976 r_angle_refined_deg 1.863 r_chiral_restr 0.116 r_bond_refined_d 0.014
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.994 r_dihedral_angle_3_deg 23.614 r_dihedral_angle_4_deg 20.996 r_mcangle_it 11.357 r_scbond_it 9.172 r_mcbond_it 7.599 r_dihedral_angle_1_deg 6.976 r_angle_refined_deg 1.863 r_chiral_restr 0.116 r_bond_refined_d 0.014 r_gen_planes_refined 0.009
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2327 Nucleic Acid Atoms Solvent Atoms Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement PDB_EXTRACT data extraction CBASS data collection