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Structure of anti-TAU AT8 FAB in the presence of phosphopeptide
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1ML8 PDB entries 1ML8 and 3LEY experimental model PDB 3LEY PDB entries 1ML8 and 3LEY
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 4 293 20% PEG 3350, 0.2 M AMMONIUM SULFATE, 15% PEG 4000, 0.2 M AMMONIUM SULFATE, 24% PEG 400
Crystal Properties Matthews coefficient Solvent content 2.87 57
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 94.69 α = 90 b = 107.38 β = 90 c = 108.57 γ = 90
Symmetry Space Group I 2 2 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD RIGAKU SATURN 944 VARIMAX HF 2012-04-03 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU MICROMAX-007 HF 1.5418
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.4 30 99.4 0.062 19.5 6 21800 -3 40.8
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.4 2.47 95.7 0.277 5.7 5.3
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB entries 1ML8 and 3LEY 2.4 15 20800 910 95.2 0.18855 0.186 0.1903 0.24829 0.2489 RANDOM 50.4
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.16 0.68 -0.51
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.256 r_scangle_it 30.647 r_scbond_it 30.299 r_dihedral_angle_4_deg 16.645 r_dihedral_angle_3_deg 13.172 r_dihedral_angle_1_deg 6.635 r_mcangle_it 5.029 r_mcbond_it 2.686 r_angle_refined_deg 1.215 r_chiral_restr 0.073
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.256 r_scangle_it 30.647 r_scbond_it 30.299 r_dihedral_angle_4_deg 16.645 r_dihedral_angle_3_deg 13.172 r_dihedral_angle_1_deg 6.635 r_mcangle_it 5.029 r_mcbond_it 2.686 r_angle_refined_deg 1.215 r_chiral_restr 0.073 r_bond_refined_d 0.009 r_bond_other_d r_angle_other_deg r_gen_planes_refined r_gen_planes_other r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3149 Nucleic Acid Atoms Solvent Atoms 188 Heterogen Atoms 5
Software Software Software Name Purpose XDS data reduction XDS data scaling REFMAC refinement PHASER phasing