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Streptococcus agalactiae AgI/II polypeptide BspA variable (V) domain
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 293 0.1 M Buffer System 1 at pH 6.5 (MES, imidazole), 0.1 M amino acids and 37.5% MPD_P1K_P3350 (Morpheus screen, Molecular Dimensions Ltd)
Crystal Properties Matthews coefficient Solvent content 2.51 50.99
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 148.14 α = 90 b = 34.42 β = 127.31 c = 92.6 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL PSI PILATUS 6M 2014-02-08 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON DIAMOND BEAMLINE I04 0.97935 Diamond I04
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.41 73.65 99.6 0.059 19.9 5.9 14728
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.41 2.54 0.14 2054
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 2.41 73.65 13981 746 99.53 0.17959 0.17664 0.1844 0.23229 0.2315 RANDOM 47.402
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -1.03 0.33 1.79 -0.58
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 39.573 r_dihedral_angle_3_deg 16.337 r_dihedral_angle_4_deg 13.545 r_long_range_B_refined 9.944 r_long_range_B_other 9.944 r_dihedral_angle_1_deg 8.489 r_scangle_other 7.558 r_mcangle_other 6.158 r_mcangle_it 6.154 r_scbond_it 5.073
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 39.573 r_dihedral_angle_3_deg 16.337 r_dihedral_angle_4_deg 13.545 r_long_range_B_refined 9.944 r_long_range_B_other 9.944 r_dihedral_angle_1_deg 8.489 r_scangle_other 7.558 r_mcangle_other 6.158 r_mcangle_it 6.154 r_scbond_it 5.073 r_scbond_other 5.065 r_mcbond_it 4.129 r_mcbond_other 4.114 r_angle_refined_deg 1.779 r_angle_other_deg 0.993 r_chiral_restr 0.103 r_bond_refined_d 0.016 r_gen_planes_refined 0.008 r_bond_other_d 0.002 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2487 Nucleic Acid Atoms Solvent Atoms 64 Heterogen Atoms 15
Software Software Software Name Purpose REFMAC refinement PHENIX phasing Coot model building