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Structure of p97 N-D1 L198W mutant in complex with ADP
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 6 289 3.7 M sodium formate, pH 6.0, 8 % glycerol
Crystal Properties Matthews coefficient Solvent content 2.45 49.85
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 145.584 α = 90 b = 145.584 β = 90 c = 84.002 γ = 120
Symmetry Space Group P 6 2 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD RAYONIX MX300HS 2015-02-01 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 22-ID 1.0 APS 22-ID
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.2 50 97 16.25 5.9 26399
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION THROUGHOUT 2.2 50 25084 1315 96.91 0.20306 0.20012 0.2109 0.25752 0.2622 RANDOM 36.593
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -2.08 -1.04 -2.08 6.74
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.426 r_dihedral_angle_4_deg 21.481 r_dihedral_angle_3_deg 19.336 r_long_range_B_refined 7.847 r_long_range_B_other 7.812 r_dihedral_angle_1_deg 6.655 r_scangle_other 5.546 r_mcangle_it 4.367 r_mcangle_other 4.366 r_scbond_it 3.38
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.426 r_dihedral_angle_4_deg 21.481 r_dihedral_angle_3_deg 19.336 r_long_range_B_refined 7.847 r_long_range_B_other 7.812 r_dihedral_angle_1_deg 6.655 r_scangle_other 5.546 r_mcangle_it 4.367 r_mcangle_other 4.366 r_scbond_it 3.38 r_scbond_other 3.379 r_mcbond_it 2.71 r_mcbond_other 2.706 r_angle_refined_deg 1.801 r_angle_other_deg 1.075 r_chiral_restr 0.103 r_bond_refined_d 0.014 r_gen_planes_refined 0.007 r_bond_other_d 0.002 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3501 Nucleic Acid Atoms Solvent Atoms 97 Heterogen Atoms 27
Software Software Software Name Purpose REFMAC refinement DENZO data reduction SCALEPACK data scaling MOLREP phasing