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X-ray crystal structure of human BRD2(BD2) in complex with RVX297 to 1.55 A resolution
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 7 298 2.6 M sodium malonate
Crystal Properties Matthews coefficient Solvent content 3 59.03
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 56.289 α = 62.09 b = 57.318 β = 72.08 c = 62.033 γ = 66.08
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315r Mirrors 2011-06-16 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON NSLS BEAMLINE X29A 1.075 NSLS X29A
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.55 50 95 0.04 0.056 0.04 14.2 2 85026
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.55 1.61 93.6 0.426 0.602 0.426 0.645 2 8333
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.55 50 80774 4250 94.76 0.1607 0.1589 0.1692 0.1948 0.2035 RANDOM 28.174
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.59 0.23 0.13 0.28 -0.34 0.09
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 29.406 r_dihedral_angle_4_deg 20.981 r_dihedral_angle_3_deg 12.982 r_dihedral_angle_1_deg 5.063 r_mcangle_it 3.06 r_mcbond_it 2.226 r_mcbond_other 2.225 r_angle_refined_deg 2.213 r_angle_other_deg 1.112 r_chiral_restr 0.131
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 29.406 r_dihedral_angle_4_deg 20.981 r_dihedral_angle_3_deg 12.982 r_dihedral_angle_1_deg 5.063 r_mcangle_it 3.06 r_mcbond_it 2.226 r_mcbond_other 2.225 r_angle_refined_deg 2.213 r_angle_other_deg 1.112 r_chiral_restr 0.131 r_bond_refined_d 0.025 r_gen_planes_refined 0.015 r_bond_other_d 0.003 r_gen_planes_other 0.002
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3641 Nucleic Acid Atoms Solvent Atoms 583 Heterogen Atoms 126
Software Software Software Name Purpose SCALEPACK data scaling REFMAC refinement PDB_EXTRACT data extraction HKL-2000 data reduction MOLREP phasing