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Human PPARgamma ligand binding dmain complexed with SB1453 in a covalent bonded form
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 7 297 2.2 M sodium malonate pH 7.0
Crystal Properties Matthews coefficient Solvent content 2.7 54.41
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 54.858 α = 90 b = 130.281 β = 90 c = 52.249 γ = 90
Symmetry Space Group P 21 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 270 2015-03-31 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON PAL/PLS BEAMLINE 7A (6B, 6C1) 0.97935 PAL/PLS 7A (6B, 6C1)
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.3 50 99.7 36.94 5.8 17551
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.3 2.34 100 5.2 5.9
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION THROUGHOUT 2.3 30 16400 843 99.66 0.19867 0.19644 0.2031 0.241 0.2404 RANDOM 58.373
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.17 -4.33 4.49
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.126 r_dihedral_angle_4_deg 20.246 r_dihedral_angle_3_deg 13.981 r_long_range_B_refined 9.421 r_long_range_B_other 9.41 r_scangle_other 6.16 r_dihedral_angle_1_deg 5.223 r_mcangle_it 5.036 r_mcangle_other 5.035 r_scbond_it 3.756
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.126 r_dihedral_angle_4_deg 20.246 r_dihedral_angle_3_deg 13.981 r_long_range_B_refined 9.421 r_long_range_B_other 9.41 r_scangle_other 6.16 r_dihedral_angle_1_deg 5.223 r_mcangle_it 5.036 r_mcangle_other 5.035 r_scbond_it 3.756 r_scbond_other 3.755 r_mcbond_it 3.205 r_mcbond_other 3.205 r_angle_refined_deg 1.498 r_angle_other_deg 0.967 r_chiral_restr 0.07 r_gen_planes_other 0.024 r_gen_planes_refined 0.015 r_bond_refined_d 0.01 r_bond_other_d 0.007 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2252 Nucleic Acid Atoms Solvent Atoms 87 Heterogen Atoms 44
Software Software Software Name Purpose REFMAC refinement HKL-2000 data reduction HKL-2000 data scaling MOLREP phasing