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Human PPARgamma ligand binding dmain complexed with SB1451 in a covalent bonded form
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 6.5 297 0.19M sodium acetate trihydrate, 0.1M sodium cacodylate pH 6.5, 26% PEG 8000
Crystal Properties Matthews coefficient Solvent content 2.72 54.86
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 55.27 α = 90 b = 131.296 β = 90 c = 51.968 γ = 90
Symmetry Space Group P 21 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 270 2015-06-01 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON PAL/PLS BEAMLINE 7A (6B, 6C1) 0.97933 PAL/PLS 7A (6B, 6C1)
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.75 50 99.7 25.2 5 10377
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.75 2.8 100 3.97 5.1
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION THROUGHOUT 2.75 30 9798 516 99.64 0.19436 0.1916 0.1976 0.24311 0.2403 RANDOM 59.267
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.29 -3.16 3.45
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.219 r_dihedral_angle_4_deg 23.109 r_dihedral_angle_3_deg 14.278 r_long_range_B_refined 9.608 r_long_range_B_other 9.529 r_scangle_other 6.617 r_dihedral_angle_1_deg 5.802 r_mcangle_it 5.671 r_mcangle_other 5.67 r_scbond_it 3.861
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.219 r_dihedral_angle_4_deg 23.109 r_dihedral_angle_3_deg 14.278 r_long_range_B_refined 9.608 r_long_range_B_other 9.529 r_scangle_other 6.617 r_dihedral_angle_1_deg 5.802 r_mcangle_it 5.671 r_mcangle_other 5.67 r_scbond_it 3.861 r_scbond_other 3.859 r_mcbond_it 3.444 r_mcbond_other 3.442 r_angle_refined_deg 1.434 r_angle_other_deg 0.943 r_chiral_restr 0.069 r_gen_planes_other 0.017 r_gen_planes_refined 0.012 r_bond_refined_d 0.01 r_bond_other_d 0.006 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2247 Nucleic Acid Atoms Solvent Atoms 39 Heterogen Atoms 44
Software Software Software Name Purpose REFMAC refinement HKL-2000 data reduction HKL-2000 data scaling MOLREP phasing