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Crystal structure of human PRMT8 in complex with SAH
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 293 Tris-Cl, NaCl, PEG6000
Crystal Properties Matthews coefficient Solvent content 3.17 61.18
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 199.983 α = 90 b = 130.943 β = 106.48 c = 294.377 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 95 CCD ADSC QUANTUM 270 2011-11-13 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON PHOTON FACTORY BEAMLINE AR-NE3A 0.9922 Photon Factory AR-NE3A
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.963 50 99.2 9.2 5.4 145707
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION THROUGHOUT 2.963 49.65 140423 7424 97.71 0.22542 0.2236 0.2272 0.2596 0.2622 RANDOM 32.741
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.04 0.05 -0.09 0.02
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.642 r_dihedral_angle_4_deg 19.083 r_dihedral_angle_3_deg 17.994 r_dihedral_angle_1_deg 6.658 r_long_range_B_refined 4.273 r_long_range_B_other 4.273 r_scangle_other 2.988 r_mcangle_it 2.567 r_mcangle_other 2.567 r_scbond_it 1.777
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.642 r_dihedral_angle_4_deg 19.083 r_dihedral_angle_3_deg 17.994 r_dihedral_angle_1_deg 6.658 r_long_range_B_refined 4.273 r_long_range_B_other 4.273 r_scangle_other 2.988 r_mcangle_it 2.567 r_mcangle_other 2.567 r_scbond_it 1.777 r_scbond_other 1.777 r_mcbond_it 1.547 r_mcbond_other 1.547 r_angle_refined_deg 1.504 r_angle_other_deg 0.899 r_chiral_restr 0.083 r_bond_refined_d 0.011 r_gen_planes_refined 0.005 r_gen_planes_other 0.003 r_bond_other_d 0.002 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 39062 Nucleic Acid Atoms Solvent Atoms Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement HKL-2000 data reduction SCALEPACK data scaling PHASER phasing