☰ Navigation Tabs
Human PPARgamma ligand binding dmain complexed with SB1406 in a covalent bonded form
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 7 297 2.2M sodium malonate pH 7.0
Crystal Properties Matthews coefficient Solvent content 2.67 54.01
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 53.33 α = 90 b = 131.332 β = 90 c = 52.852 γ = 90
Symmetry Space Group P 21 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 270 2014-12-18 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON PAL/PLS BEAMLINE 7A (6B, 6C1) 0.97934 PAL/PLS 7A (6B, 6C1)
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.95 50 99.3 38.2 6.8 8258
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.95 3 100 4.6 7.1
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION THROUGHOUT 2.95 30 7861 359 99.18 0.20703 0.20477 0.2117 0.25743 0.2656 RANDOM 85.374
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.88 -6.26 7.14
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.987 r_dihedral_angle_3_deg 14.381 r_long_range_B_other 11.332 r_long_range_B_refined 11.33 r_dihedral_angle_4_deg 9.819 r_scangle_other 7.738 r_mcangle_it 7.265 r_mcangle_other 7.264 r_dihedral_angle_1_deg 5.274 r_mcbond_it 4.543
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.987 r_dihedral_angle_3_deg 14.381 r_long_range_B_other 11.332 r_long_range_B_refined 11.33 r_dihedral_angle_4_deg 9.819 r_scangle_other 7.738 r_mcangle_it 7.265 r_mcangle_other 7.264 r_dihedral_angle_1_deg 5.274 r_mcbond_it 4.543 r_mcbond_other 4.542 r_scbond_it 4.5 r_scbond_other 4.498 r_angle_refined_deg 1.47 r_angle_other_deg 0.887 r_chiral_restr 0.065 r_gen_planes_refined 0.016 r_gen_planes_other 0.013 r_bond_refined_d 0.009 r_bond_other_d 0.006 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2146 Nucleic Acid Atoms Solvent Atoms 25 Heterogen Atoms 26
Software Software Software Name Purpose REFMAC refinement HKL-2000 data reduction HKL-2000 data scaling MOLREP phasing