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Crystal Structure of EV71 3C Proteinase in complex with compound 6
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 4GHQ
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 8.5 289 100mM Tris, 25% PEG4000, 0.8M lithium chloride
Crystal Properties Matthews coefficient Solvent content 1.97 33.14
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 63.938 α = 90 b = 65.158 β = 90 c = 75.564 γ = 90
Symmetry Space Group C 2 2 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315r mirrors 2013-06-25 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SSRF BEAMLINE BL17U 0.98 SSRF BL17U
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.06 50 96.5 7.7 4 9259
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.06 2.13 97.2 0.401 2 4
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 4GHQ 2.06 50 9259 471 96.64 0.2333 0.2304 0.2392 0.2921 0.2887 RANDOM 37.02
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.73 0.2 -0.93
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 41.849 r_dihedral_angle_4_deg 18.569 r_dihedral_angle_3_deg 18.324 r_dihedral_angle_1_deg 7.075 r_mcangle_it 4.455 r_mcbond_it 2.979 r_mcbond_other 2.978 r_angle_refined_deg 1.853 r_angle_other_deg 0.916 r_chiral_restr 0.1
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 41.849 r_dihedral_angle_4_deg 18.569 r_dihedral_angle_3_deg 18.324 r_dihedral_angle_1_deg 7.075 r_mcangle_it 4.455 r_mcbond_it 2.979 r_mcbond_other 2.978 r_angle_refined_deg 1.853 r_angle_other_deg 0.916 r_chiral_restr 0.1 r_bond_refined_d 0.014 r_gen_planes_refined 0.007 r_bond_other_d 0.002 r_gen_planes_other 0.002
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1401 Nucleic Acid Atoms Solvent Atoms 78 Heterogen Atoms 30
Software Software Software Name Purpose HKL-2000 data scaling REFMAC refinement PDB_EXTRACT data extraction