☰ Navigation Tabs
Crystal Structure of EV71 3C Proteinase in complex with compound 7
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 4GHQ
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 8.5 289 100mM Tris, 25% PEG4000, 0.8M lithium chloride
Crystal Properties Matthews coefficient Solvent content 2.35 47.61
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 85.84 α = 90 b = 85.709 β = 90 c = 101.315 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315r mirrors 2013-04-28 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SSRF BEAMLINE BL17U 0.98 SSRF BL17U
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 3 50 96.7 0.148 8.1 4.8 14849
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 3 3.05 98 0.879 4.9 743
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 4GHQ 3.01 42.89 14092 731 95.96 0.2311 0.2287 0.2288 0.2787 0.2759 RANDOM 91.206
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1.11 -0.13 -0.98
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 39.393 r_dihedral_angle_4_deg 22.498 r_dihedral_angle_3_deg 19.853 r_mcangle_it 8.072 r_dihedral_angle_1_deg 6.032 r_mcbond_other 4.911 r_mcbond_it 4.91 r_angle_refined_deg 1.73 r_angle_other_deg 1.589 r_chiral_restr 0.071
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 39.393 r_dihedral_angle_4_deg 22.498 r_dihedral_angle_3_deg 19.853 r_mcangle_it 8.072 r_dihedral_angle_1_deg 6.032 r_mcbond_other 4.911 r_mcbond_it 4.91 r_angle_refined_deg 1.73 r_angle_other_deg 1.589 r_chiral_restr 0.071 r_bond_refined_d 0.015 r_gen_planes_refined 0.009 r_gen_planes_other 0.009 r_bond_other_d 0.007
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 5553 Nucleic Acid Atoms Solvent Atoms Heterogen Atoms 68
Software Software Software Name Purpose HKL-2000 data scaling REFMAC refinement PDB_EXTRACT data extraction