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Crystal structure of Tetrahymena p19
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 EVAPORATION 7 277 4.0 M sodium formate pH 7.0, 2% (v/v) PEG 400
Crystal Properties Matthews coefficient Solvent content 2.58 52.32
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 40.732 α = 90 b = 128.631 β = 105.05 c = 75.328 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 277 CCD MAR CCD 165 mm 2014-07-09 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 21-ID-D 1.0000 APS 21-ID-D
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.69 50 99.1 0.075 0.081 0.029 8.9 7.4 83371
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.69 1.72 82.8 0.657 0.712 0.27 0.835 6.7 3501
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 1.7 39.37 77441 4060 99.33 0.1789 0.1768 0.1763 0.2201 0.2192 RANDOM 17.545
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.04 -0.11 -0.27 0.3
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.56 r_sphericity_free 19.63 r_dihedral_angle_4_deg 13.169 r_dihedral_angle_3_deg 12.606 r_sphericity_bonded 9.632 r_dihedral_angle_1_deg 6.295 r_rigid_bond_restr 1.829 r_angle_refined_deg 1.117 r_chiral_restr 0.088 r_bond_refined_d 0.006
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.56 r_sphericity_free 19.63 r_dihedral_angle_4_deg 13.169 r_dihedral_angle_3_deg 12.606 r_sphericity_bonded 9.632 r_dihedral_angle_1_deg 6.295 r_rigid_bond_restr 1.829 r_angle_refined_deg 1.117 r_chiral_restr 0.088 r_bond_refined_d 0.006 r_gen_planes_refined 0.004
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 5121 Nucleic Acid Atoms Solvent Atoms 614 Heterogen Atoms
Software Software Software Name Purpose HKL-2000 data scaling REFMAC refinement PDB_EXTRACT data extraction HKL-2000 data collection Coot model building