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Crystal structure of the Human Cytomegalovirus Nuclear Egress Complex (NEC)
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7.9 298 0.1 M Tris, 0.1 M NaCl, 10-15% PEG 3350 (w/v), 0.3-0.5 M CaCl2
Crystal Properties Matthews coefficient Solvent content 2.09 41.26
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 142.254 α = 90 b = 33.978 β = 121.76 c = 92.995 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315 2012-06-10 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 24-ID-E 0.9792 APS 24-ID-E
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.47 79.08 97.5 14.47 3.5 13720
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.47 88.9 2.1
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION THROUGHOUT 2.47 79.07 12896 698 96.91 0.25644 0.25423 0.2492 0.2992 0.2934 RANDOM 88.923
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -3.61 2.97 -8.47 4.76
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.227 r_dihedral_angle_4_deg 13.753 r_dihedral_angle_3_deg 12.694 r_long_range_B_refined 6.55 r_long_range_B_other 6.549 r_dihedral_angle_1_deg 5.071 r_mcangle_it 3.356 r_mcangle_other 3.355 r_scangle_other 2.714 r_mcbond_it 1.884
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.227 r_dihedral_angle_4_deg 13.753 r_dihedral_angle_3_deg 12.694 r_long_range_B_refined 6.55 r_long_range_B_other 6.549 r_dihedral_angle_1_deg 5.071 r_mcangle_it 3.356 r_mcangle_other 3.355 r_scangle_other 2.714 r_mcbond_it 1.884 r_mcbond_other 1.884 r_scbond_it 1.492 r_scbond_other 1.491 r_angle_refined_deg 1.019 r_angle_other_deg 0.702 r_chiral_restr 0.058 r_bond_refined_d 0.005 r_gen_planes_refined 0.004 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3189 Nucleic Acid Atoms Solvent Atoms Heterogen Atoms 2
Software Software Software Name Purpose REFMAC refinement XDS data scaling PHASER phasing