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Aurora A Kinase in complex with ATP in space group P41212
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 3FDN
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 7 292 100 mM HEPES, 200 mM magnesium sulfate, 2-20% PEG 3350
Crystal Properties Matthews coefficient Solvent content 3.61 65.96
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 81.46 α = 90 b = 81.46 β = 90 c = 137.38 γ = 90
Symmetry Space Group P 41 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 6M-F 2014-07-13 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON DIAMOND BEAMLINE I04-1 0.92 Diamond I04-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.95 57.6 99.9 0.054 27.7 12.9 34608 35.38
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.95 2 99.8 0.67 4.2 13.5
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 3FDN 1.95 18.22 32728 1652 99.74 0.20642 0.2055 0.213 0.22552 0.2296 RANDOM 40.296
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.767 r_dihedral_angle_4_deg 17.429 r_dihedral_angle_3_deg 14.491 r_long_range_B_other 11.108 r_long_range_B_refined 11.084 r_scangle_other 9.805 r_scbond_it 7.344 r_scbond_other 7.341 r_mcangle_other 4.063 r_mcangle_it 3.942
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.767 r_dihedral_angle_4_deg 17.429 r_dihedral_angle_3_deg 14.491 r_long_range_B_other 11.108 r_long_range_B_refined 11.084 r_scangle_other 9.805 r_scbond_it 7.344 r_scbond_other 7.341 r_mcangle_other 4.063 r_mcangle_it 3.942 r_dihedral_angle_1_deg 3.793 r_angle_other_deg 3.673 r_mcbond_it 3.153 r_mcbond_other 2.762 r_angle_refined_deg 1.694 r_chiral_restr 0.095 r_gen_planes_other 0.023 r_bond_refined_d 0.013 r_gen_planes_refined 0.01 r_bond_other_d r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2173 Nucleic Acid Atoms Solvent Atoms 120 Heterogen Atoms 38
Software Software Software Name Purpose REFMAC refinement XDS data reduction PHASER phasing XSCALE data scaling