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Crystal Structure of C-terminal domain of mouse eRF1 in complex with RNase H domain of RT of Moloney Murine Leukemia Virus
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2HB5 2HB5 and 1DT9 experimental model PDB 1DT9 2HB5 and 1DT9
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 8.5 288 0.1 M Tris pH 8.5, 18 % ammonium dihydrogen phosphate
Crystal Properties Matthews coefficient Solvent content 2.29 46.21
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 89.63 α = 90 b = 63.862 β = 96.9 c = 60.431 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL PSI PILATUS 6M 2014-07-31 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON DIAMOND BEAMLINE I02 1 Diamond I02
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.8 60 99.9 23.6 6.8 8469
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.8 2.9 99.9 0.62 3.2 6.8
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2HB5 and 1DT9 2.8 59.99 8037 431 99.88 0.2107 0.20693 0.28032 0.2669 RANDOM 75.49
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.27 0.23 0.04
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.729 r_dihedral_angle_3_deg 17.455 r_dihedral_angle_4_deg 15.372 r_long_range_B_refined 12.444 r_long_range_B_other 12.443 r_scangle_other 9.406 r_dihedral_angle_1_deg 8.283 r_mcangle_it 8.166 r_mcangle_other 8.163 r_scbond_it 5.897
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.729 r_dihedral_angle_3_deg 17.455 r_dihedral_angle_4_deg 15.372 r_long_range_B_refined 12.444 r_long_range_B_other 12.443 r_scangle_other 9.406 r_dihedral_angle_1_deg 8.283 r_mcangle_it 8.166 r_mcangle_other 8.163 r_scbond_it 5.897 r_scbond_other 5.894 r_mcbond_other 5.464 r_mcbond_it 5.463 r_angle_refined_deg 1.577 r_angle_other_deg 0.986 r_chiral_restr 0.089 r_bond_refined_d 0.012 r_gen_planes_refined 0.006 r_bond_other_d 0.002 r_gen_planes_other 0.002 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2041 Nucleic Acid Atoms Solvent Atoms 4 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement PHENIX refinement