☰ Navigation Tabs
Aminopeptidase N (pepN) from Francisella tularensis subsp. tularensis SCHU S4
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2DQ6
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 6.5 293 0.2 M Sodium iodide 0.1 M Bis Tris propane pH 6.5 20% (w/v) PEG
Crystal Properties Matthews coefficient Solvent content 2.68 54.14
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 75.67 α = 90 b = 75.67 β = 90 c = 161.042 γ = 120
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 300 mm CCD 2010-03-04 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 21-ID-G 0.97856 APS 21-ID-G
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.5 65.53 99.9 0.104 0.104 15.2 5.4 26293 -3
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.5 2.52 99.8 0.921 3.8
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2DQ6 2.51 65.53 26293 1412 78.35 0.19653 0.19303 0.1951 0.25998 0.2591 RANDOM 57.348
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.33 0.17 0.33 -1.07
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.34 r_dihedral_angle_4_deg 13.351 r_dihedral_angle_3_deg 13.347 r_long_range_B_refined 8.906 r_long_range_B_other 8.904 r_scangle_other 7.09 r_mcangle_it 5.88 r_mcangle_other 5.88 r_dihedral_angle_1_deg 5.281 r_scbond_it 4.905
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.34 r_dihedral_angle_4_deg 13.351 r_dihedral_angle_3_deg 13.347 r_long_range_B_refined 8.906 r_long_range_B_other 8.904 r_scangle_other 7.09 r_mcangle_it 5.88 r_mcangle_other 5.88 r_dihedral_angle_1_deg 5.281 r_scbond_it 4.905 r_scbond_other 4.863 r_mcbond_it 4.043 r_mcbond_other 4.04 r_angle_refined_deg 0.931 r_angle_other_deg 0.674 r_chiral_restr 0.052 r_bond_refined_d 0.005 r_gen_planes_refined 0.003 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 6867 Nucleic Acid Atoms Solvent Atoms 62 Heterogen Atoms 22
Software Software Software Name Purpose REFMAC refinement HKL-3000 data reduction HKL-3000 data scaling HKL-3000 phasing