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Crystal structure of aminotransferase CrmG from Actinoalloteichus sp. WH1-2216-6 in complex with the PMP external aldimine adduct with Caerulomycin M
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 8.5 293 0.2M Sodium acetate, 0.1M TRIS pH 8.5, 32% PEG3350, 2% glycerol
Crystal Properties Matthews coefficient Solvent content 2.39 48.6
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 83.788 α = 106.63 b = 83.687 β = 109.09 c = 88.052 γ = 95.07
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 6M 2015-06-22 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SSRF BEAMLINE BL19U1 0.9785 SSRF BL19U1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rpim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.3 49.25 92.2 0.152 0.074 0.988 8.1 4.6 86965
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.3 2.34 87.5 0.555 0.296 0.76 2.5 4 4115
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2.3 49.25 82633 4323 92.21 0.2001 0.198 0.2393 0.2474 RANDOM 27.183
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.32 0.15 0.08 0.1 -0.22 -0.22
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.374 r_dihedral_angle_4_deg 22.126 r_dihedral_angle_3_deg 17.754 r_dihedral_angle_1_deg 7.83 r_mcangle_it 4.51 r_mcbond_it 3.052 r_mcbond_other 3.052 r_angle_refined_deg 0.703 r_angle_other_deg 0.611 r_chiral_restr 0.065
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.374 r_dihedral_angle_4_deg 22.126 r_dihedral_angle_3_deg 17.754 r_dihedral_angle_1_deg 7.83 r_mcangle_it 4.51 r_mcbond_it 3.052 r_mcbond_other 3.052 r_angle_refined_deg 0.703 r_angle_other_deg 0.611 r_chiral_restr 0.065 r_bond_refined_d 0.014 r_gen_planes_refined 0.014 r_gen_planes_other 0.008 r_bond_other_d 0.004
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 15813 Nucleic Acid Atoms Solvent Atoms 417 Heterogen Atoms 150
Software Software Software Name Purpose Aimless data scaling REFMAC refinement PDB_EXTRACT data extraction Aimless data reduction MOLREP phasing