☰ Navigation Tabs
Crystal structure of aminotransferase CrmG from Actinoalloteichus sp. WH1-2216-6 in complex with PMP
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 8.5 293 0.2M Sodium acetate, 0.1M TRIS pH 8.5, 32% PEG3350, 2% glycerol
Crystal Properties Matthews coefficient Solvent content 2.41 48.95
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 83.874 α = 106.66 b = 83.858 β = 109.25 c = 88.438 γ = 94.84
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 6M 2014-11-14 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SSRF BEAMLINE BL19U1 0.9785 SSRF BL19U1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rpim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.46 50.51 97.3 0.163 0.098 0.947 6.8 3.5 75400
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.46 2.51 96.3 0.627 0.381 0.59 2.3 3.4 4396
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2.46 50.51 71589 3750 88.22 0.2081 0.2065 0.2279 0.2381 0.2557 RANDOM 19.832
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -1.2 0.02 -6.18 -2.96 -4.37 4.16
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.359 r_dihedral_angle_4_deg 21.189 r_dihedral_angle_3_deg 17.939 r_dihedral_angle_1_deg 7.508 r_mcangle_it 2.054 r_mcbond_it 1.252 r_mcbond_other 1.252 r_angle_refined_deg 0.819 r_angle_other_deg 0.68 r_chiral_restr 0.061
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.359 r_dihedral_angle_4_deg 21.189 r_dihedral_angle_3_deg 17.939 r_dihedral_angle_1_deg 7.508 r_mcangle_it 2.054 r_mcbond_it 1.252 r_mcbond_other 1.252 r_angle_refined_deg 0.819 r_angle_other_deg 0.68 r_chiral_restr 0.061 r_bond_refined_d 0.012 r_bond_other_d 0.004 r_gen_planes_refined 0.003 r_gen_planes_other 0.002
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 15836 Nucleic Acid Atoms Solvent Atoms 278 Heterogen Atoms 128
Software Software Software Name Purpose MOSFLM data collection Aimless data scaling REFMAC refinement PDB_EXTRACT data extraction Aimless data reduction MOLREP phasing