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Crystal structure of aminotransferase CrmG from Actinoalloteichus sp. WH1-2216-6 in complex with PLP
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 8.5 293 0.2M Sodium acetate, 0.1M TRIS pH 8.5, 32% PEG3350, 2% glycerol
Crystal Properties Matthews coefficient Solvent content 2.44 49.56
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 84.078 α = 106.71 b = 84.21 β = 109.16 c = 88.949 γ = 95.03
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315r 2015-01-09 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SSRF BEAMLINE BL17U 0.9793 SSRF BL17U
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.6 69.92 92.8 0.136 7.4 3.9 61697
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.6 2.66 89.5 0.547 2.3 3.4
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2.6 62.02 58537 3146 92.8 0.217 0.2146 0.2169 0.2615 0.2624 RANDOM 33.739
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -13.64 5.55 -0.54 2.63 -6.08 11.01
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.022 r_dihedral_angle_4_deg 18.622 r_dihedral_angle_3_deg 18.549 r_dihedral_angle_1_deg 7.984 r_mcangle_it 5.021 r_mcbond_it 3.401 r_mcbond_other 3.399 r_angle_refined_deg 0.578 r_angle_other_deg 0.572 r_chiral_restr 0.061
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.022 r_dihedral_angle_4_deg 18.622 r_dihedral_angle_3_deg 18.549 r_dihedral_angle_1_deg 7.984 r_mcangle_it 5.021 r_mcbond_it 3.401 r_mcbond_other 3.399 r_angle_refined_deg 0.578 r_angle_other_deg 0.572 r_chiral_restr 0.061 r_bond_refined_d 0.015 r_bond_other_d 0.006 r_gen_planes_refined 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 15824 Nucleic Acid Atoms Solvent Atoms 112 Heterogen Atoms 76
Software Software Software Name Purpose MOSFLM data collection Aimless data scaling REFMAC refinement PDB_EXTRACT data extraction Aimless data reduction PHENIX phasing