☰ Navigation Tabs
Crystal structure of bacterial adhesin, FNE from Streptococcus equi spp. equi.
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2XI9 2XI9, 3LTJ experimental model PDB 3LTJ 2XI9, 3LTJ
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 277.15 magnesium formate, PEG 3350
Crystal Properties Matthews coefficient Solvent content 2.34 47.5
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 113.688 α = 90 b = 113.688 β = 90 c = 152.623 γ = 120
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 153 PIXEL DECTRIS PILATUS 6M 2012-02-23 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SOLEIL BEAMLINE PROXIMA 1 0.972 SOLEIL PROXIMA 1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.83 50 97.78 0.06 14.2 2.3 91861
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.83 1.94 97.7 0.642 1.9 2.3
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2XI9, 3LTJ 1.83 50 96630 4769 97.78 0.1688 0.1671 0.1627 0.2025 0.2001 RANDOM 19.445
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.21 0.1 0.21 -0.68
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 40.56 r_dihedral_angle_3_deg 15.02 r_dihedral_angle_4_deg 14.041 r_dihedral_angle_1_deg 5.693 r_mcangle_it 2.946 r_mcbond_other 2.378 r_mcbond_it 2.377 r_angle_refined_deg 1.501 r_angle_other_deg 1.338 r_chiral_restr 0.091
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 40.56 r_dihedral_angle_3_deg 15.02 r_dihedral_angle_4_deg 14.041 r_dihedral_angle_1_deg 5.693 r_mcangle_it 2.946 r_mcbond_other 2.378 r_mcbond_it 2.377 r_angle_refined_deg 1.501 r_angle_other_deg 1.338 r_chiral_restr 0.091 r_bond_refined_d 0.013 r_gen_planes_refined 0.009 r_bond_other_d 0.007 r_gen_planes_other 0.005
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 8507 Nucleic Acid Atoms Solvent Atoms 1102 Heterogen Atoms 36
Software Software Software Name Purpose XDS data reduction MOLREP phasing REFMAC refinement PDB_EXTRACT data extraction XSCALE data scaling