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RNA octamer containing (S)-5' methyl, 2'-F U.
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 5.5 298 40 mM sodium cacodylate, 20 mM hexamine Co(III) chloride, 20 mM MgCl2
Crystal Properties Matthews coefficient Solvent content 1.95 37.04
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 31.172 α = 90 b = 31.172 β = 90 c = 84.325 γ = 90
Symmetry Space Group P 43 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 IMAGE PLATE MAR scanner 300 mm plate 2015-07-24 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 21-ID-D 0.91833 APS 21-ID-D
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.2 50 99.7 0.145 11.3 14.1 13758
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.2 1.22 100 0.584 8.1
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 1.2 29.24 12988 708 99.6 0.121 0.12 0.1195 0.157 0.1575 RANDOM 12.42
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.01
RMS Deviations Key Refinement Restraint Deviation r_sphericity_free 57.545 r_angle_other_deg 56.801 r_angle_refined_deg 42.196 r_rigid_bond_restr 14.638 r_sphericity_bonded 7.632 r_chiral_restr 3.623 r_bond_other_d 2.887 r_bond_refined_d 1.823 r_scbond_it 1.468 r_gen_planes_other 0.296
RMS Deviations Key Refinement Restraint Deviation r_sphericity_free 57.545 r_angle_other_deg 56.801 r_angle_refined_deg 42.196 r_rigid_bond_restr 14.638 r_sphericity_bonded 7.632 r_chiral_restr 3.623 r_bond_other_d 2.887 r_bond_refined_d 1.823 r_scbond_it 1.468 r_gen_planes_other 0.296 r_gen_planes_refined 0.223 r_dihedral_angle_1_deg r_dihedral_angle_2_deg r_dihedral_angle_3_deg r_dihedral_angle_4_deg r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_it r_mcbond_other r_mcangle_it r_mcangle_other r_scbond_other r_scangle_it r_scangle_other r_long_range_B_refined r_long_range_B_other
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms Nucleic Acid Atoms 338 Solvent Atoms 126 Heterogen Atoms 28
Software Software Software Name Purpose REFMAC refinement HKL-2000 data collection HKL-2000 data scaling SHELX phasing PDB_EXTRACT data extraction HKL-2000 data reduction