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Structure of Chaetomium thermophilum Skn7 coiled-coil domain, crystal form III
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 5D5Y
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 5.5 291 25 % PEG-3350, 0.2 M MgCl2 and 0.1 M Bis-Tris pH 5.5
Crystal Properties Matthews coefficient Solvent content 1.7 27.7
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 50.73 α = 90 b = 40.202 β = 118.57 c = 52.777 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 6M 2014-05-17 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID29 0.97625 ESRF ID29
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rpim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.9 44.55 97.8 0.069 0.048 0.998 7.2 2.8 14684 26.9
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.9 1.94 96.6 0.599 0.407 0.722 1.7 2.8 915
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 5D5Y 1.9 44.55 13834 753 97.15 0.2432 0.2405 0.2381 0.2947 0.2823 RANDOM 45.994
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 31.62 3.69 5.11 -36.73
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 44.759 r_dihedral_angle_3_deg 17.67 r_dihedral_angle_4_deg 13.156 r_dihedral_angle_1_deg 6.148 r_angle_other_deg 1.795 r_angle_refined_deg 1.757 r_chiral_restr 0.09 r_bond_refined_d 0.019 r_bond_other_d 0.009 r_gen_planes_refined 0.009
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 44.759 r_dihedral_angle_3_deg 17.67 r_dihedral_angle_4_deg 13.156 r_dihedral_angle_1_deg 6.148 r_angle_other_deg 1.795 r_angle_refined_deg 1.757 r_chiral_restr 0.09 r_bond_refined_d 0.019 r_bond_other_d 0.009 r_gen_planes_refined 0.009 r_gen_planes_other 0.005
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1850 Nucleic Acid Atoms Solvent Atoms 77 Heterogen Atoms
Software Software Software Name Purpose Aimless data scaling MOLREP phasing REFMAC refinement PDB_EXTRACT data extraction XDS data reduction