☰ Navigation Tabs
Crystal structure of Chaetomium thermophilum Skn7 with HSE DNA
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 3HTS
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 293 11 % PEG-3350, 0.18 M tri-Ammonium Citrate
Crystal Properties Matthews coefficient Solvent content 2.16 42.96
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 39.771 α = 90 b = 78.397 β = 90 c = 90.084 γ = 90
Symmetry Space Group C 2 2 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 6M 2014-02-14 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID29 0.97702 ESRF ID29
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Rrim I (All) Rpim I (All) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.349 45.042 98.9 0.045 0.051 0.023 17.4 4.7 6090 6090 61.1
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Rpim I (All) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.349 2.48 99.2 0.958 0.958 0.469 0.8 4.8 870
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 3HTS 2.35 30 5791 280 98.6 0.2173 0.2154 0.218 0.2501 0.2616 RANDOM 72.272
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -6.22 4.6 1.62
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.317 r_dihedral_angle_3_deg 17.2 r_dihedral_angle_4_deg 11.042 r_dihedral_angle_1_deg 6.563 r_angle_other_deg 1.397 r_angle_refined_deg 1.044 r_chiral_restr 0.103 r_bond_refined_d 0.006 r_gen_planes_refined 0.004 r_bond_other_d 0.001
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.317 r_dihedral_angle_3_deg 17.2 r_dihedral_angle_4_deg 11.042 r_dihedral_angle_1_deg 6.563 r_angle_other_deg 1.397 r_angle_refined_deg 1.044 r_chiral_restr 0.103 r_bond_refined_d 0.006 r_gen_planes_refined 0.004 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 816 Nucleic Acid Atoms 243 Solvent Atoms 22 Heterogen Atoms
Software Software Software Name Purpose SCALA data scaling MOLREP phasing REFMAC refinement PDB_EXTRACT data extraction XDS data reduction