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Crystal structure of human Hsf1 with HSE DNA
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 5D5W
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 6.5 293 21 % PEG-3350, 0.2 M (NH4)2_SO4
Crystal Properties Matthews coefficient Solvent content 2.17 43.38
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 37.436 α = 90 b = 39.82 β = 90 c = 94.384 γ = 90
Symmetry Space Group P 2 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 2M 2014-09-24 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID23-2 0.87260 ESRF ID23-2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rpim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.91 47.19 96.9 0.138 0.069 0.994 9 4.9 3303 41.9
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.91 3.09 82.7 0.821 0.403 0.75 2.1 4.8 449
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 5D5W 2.91 30 3137 145 96.93 0.2247 0.2228 0.2256 0.2673 0.2621 RANDOM 61.167
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 6.75 -2.67 -4.08
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 30.16 r_dihedral_angle_4_deg 17.363 r_dihedral_angle_3_deg 13.651 r_dihedral_angle_1_deg 5.648 r_angle_refined_deg 0.883 r_angle_other_deg 0.853 r_chiral_restr 0.051 r_bond_refined_d 0.005 r_gen_planes_refined 0.004 r_bond_other_d 0.001
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 30.16 r_dihedral_angle_4_deg 17.363 r_dihedral_angle_3_deg 13.651 r_dihedral_angle_1_deg 5.648 r_angle_refined_deg 0.883 r_angle_other_deg 0.853 r_chiral_restr 0.051 r_bond_refined_d 0.005 r_gen_planes_refined 0.004 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 810 Nucleic Acid Atoms 243 Solvent Atoms 2 Heterogen Atoms
Software Software Software Name Purpose Aimless data scaling MOLREP phasing REFMAC refinement PDB_EXTRACT data extraction XDS data reduction