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Crystal Structure of the Human Cytomegalovirus pUL50-pUL53 Complex
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 8 293 Protein concentration: 10-13 mg/ml
Protein buffer: 50 mM Tris/HCl pH 8.0, 150 mM NaCl, 2 mM TCEP
Reservoir solution: 0.2 mM CaCl2, 20 % (w/v) PEG 3350
Ratio: 1:1 protein:reservoir solution
Crystal Properties Matthews coefficient Solvent content 3.09 60.19
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 118.153 α = 90 b = 118.153 β = 90 c = 73.623 γ = 120
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL PSI PILATUS 6M 2015-05-30 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON BESSY BEAMLINE 14.1 0.9184 BESSY 14.1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.44 50 99.9 0.088 13.5 6.8 20319 68.3
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.44 2.5 99.9 1.298 1.3 6.6
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 2.44 46.08 20319 1620 99.94 0.22566 0.22092 0.2237 0.28717 0.2879 RANDOM 77.975
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1.29 0.65 1.29 -4.2
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 39.834 r_dihedral_angle_3_deg 17.311 r_dihedral_angle_4_deg 10.777 r_dihedral_angle_1_deg 6.674 r_long_range_B_refined 3.75 r_long_range_B_other 3.75 r_scangle_other 1.899 r_mcangle_it 1.804 r_mcangle_other 1.804 r_angle_refined_deg 1.413
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 39.834 r_dihedral_angle_3_deg 17.311 r_dihedral_angle_4_deg 10.777 r_dihedral_angle_1_deg 6.674 r_long_range_B_refined 3.75 r_long_range_B_other 3.75 r_scangle_other 1.899 r_mcangle_it 1.804 r_mcangle_other 1.804 r_angle_refined_deg 1.413 r_scbond_it 1.119 r_scbond_other 1.118 r_mcbond_it 1.078 r_mcbond_other 1.078 r_angle_other_deg 0.923 r_chiral_restr 0.081 r_bond_refined_d 0.01 r_gen_planes_refined 0.006 r_bond_other_d 0.002 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3076 Nucleic Acid Atoms Solvent Atoms 20 Heterogen Atoms 1
Software Software Software Name Purpose REFMAC refinement XDS data reduction XDS data scaling SHELX phasing PHENIX model building Coot model building