☰ Navigation Tabs
High-resolution nitrite complex of a copper nitrite reductase determined by synchrotron radiation crystallography
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 4.1 293 100mM sodium acetate (pH 4.1) and 7% PEG 4000
Crystal Properties Matthews coefficient Solvent content 2.06 40.28
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 61.419 α = 90 b = 102.174 β = 90 c = 145.791 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD RIGAKU SATURN A200 2015-02-05 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SPRING-8 BEAMLINE BL26B1 0.95000 SPring-8 BL26B1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.3 50 99.9 32.6 9.8 224672
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.3 1.35 100 2.9
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.3 49.51 213512 11055 99.9 0.12529 0.12322 0.123 0.16475 0.1646 RANDOM 18.9
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.127 r_sphericity_free 28.875 r_dihedral_angle_4_deg 20.323 r_sphericity_bonded 13.768 r_dihedral_angle_3_deg 13.402 r_dihedral_angle_1_deg 7.686 r_rigid_bond_restr 7.564 r_scbond_it 4.979 r_long_range_B_refined 4.319 r_mcangle_it 2.488
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.127 r_sphericity_free 28.875 r_dihedral_angle_4_deg 20.323 r_sphericity_bonded 13.768 r_dihedral_angle_3_deg 13.402 r_dihedral_angle_1_deg 7.686 r_rigid_bond_restr 7.564 r_scbond_it 4.979 r_long_range_B_refined 4.319 r_mcangle_it 2.488 r_angle_refined_deg 2.422 r_mcbond_it 2.257 r_chiral_restr 0.175 r_bond_refined_d 0.027 r_gen_planes_refined 0.015 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_it r_scangle_other r_long_range_B_other
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 7750 Nucleic Acid Atoms Solvent Atoms 893 Heterogen Atoms 155
Software Software Software Name Purpose REFMAC refinement HKL-2000 data reduction HKL-2000 data scaling PHASER phasing