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Crystal structure of STPR from Bombyx mori in complex with 18-bp DNA containing four repetitive units of ATAC
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 5.6 293 18% PEG 2000, 0.1 M sodium citrate pH5.6
Crystal Properties Matthews coefficient Solvent content 2.52 51.12
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 44.011 α = 90 b = 44.011 β = 90 c = 237.869 γ = 90
Symmetry Space Group P 43 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315r 2014-11-23 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SSRF BEAMLINE BL17U 0.979 SSRF BL17U
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.2 50 99.1 14.4 3.2 22628
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION THROUGHOUT 2.2 43.28 11993 643 98.74 0.22808 0.22672 0.2334 0.25324 0.2591 RANDOM 41.527
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.3 0.3 -0.61
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 27.241 r_dihedral_angle_3_deg 17.526 r_dihedral_angle_4_deg 16.18 r_long_range_B_refined 7.007 r_long_range_B_other 7.006 r_scangle_other 5.724 r_dihedral_angle_1_deg 4.661 r_mcangle_it 4.228 r_mcangle_other 4.225 r_scbond_it 4.196
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 27.241 r_dihedral_angle_3_deg 17.526 r_dihedral_angle_4_deg 16.18 r_long_range_B_refined 7.007 r_long_range_B_other 7.006 r_scangle_other 5.724 r_dihedral_angle_1_deg 4.661 r_mcangle_it 4.228 r_mcangle_other 4.225 r_scbond_it 4.196 r_scbond_other 4.195 r_mcbond_it 3.359 r_mcbond_other 3.357 r_angle_refined_deg 1.848 r_angle_other_deg 1.301 r_chiral_restr 0.087 r_bond_refined_d 0.014 r_gen_planes_refined 0.013 r_gen_planes_other 0.002 r_bond_other_d 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 726 Nucleic Acid Atoms 732 Solvent Atoms 72 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement HKL-2000 data reduction SCALA data scaling MOLREP phasing