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The crystal structure of STPR from Bombyx mori in complex with 13-bp DNA derived from the +290 site of fibroin gene
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 293 15% PEG4000, 20% 2-propanol, 0.1M sodium citrate pH5.6
Crystal Properties Matthews coefficient Solvent content 2.71 54.66
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 123.18 α = 90 b = 123.18 β = 90 c = 73.574 γ = 120
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315r 2013-10-21 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SSRF BEAMLINE BL17U 0.979 SSRF BL17U
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.95 50 98.2 12.6 4.6 15446
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION THROUGHOUT 1.95 27.45 14672 774 98.14 0.20616 0.20483 0.2189 0.23192 0.2361 RANDOM 47.583
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.9 -0.45 -0.9 2.92
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 25.064 r_dihedral_angle_3_deg 13.944 r_dihedral_angle_4_deg 13.507 r_long_range_B_refined 6.317 r_long_range_B_other 6.161 r_dihedral_angle_1_deg 4.221 r_scangle_other 2.533 r_mcangle_it 2.503 r_mcangle_other 2.5 r_scbond_other 1.642
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 25.064 r_dihedral_angle_3_deg 13.944 r_dihedral_angle_4_deg 13.507 r_long_range_B_refined 6.317 r_long_range_B_other 6.161 r_dihedral_angle_1_deg 4.221 r_scangle_other 2.533 r_mcangle_it 2.503 r_mcangle_other 2.5 r_scbond_other 1.642 r_scbond_it 1.641 r_mcbond_it 1.58 r_mcbond_other 1.567 r_angle_refined_deg 1.299 r_angle_other_deg 1.209 r_chiral_restr 0.062 r_gen_planes_refined 0.01 r_bond_refined_d 0.007 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 508 Nucleic Acid Atoms 527 Solvent Atoms 92 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement HKL-2000 data reduction SCALA data scaling PHENIX phasing