☰ Navigation Tabs
Crystal structure of maize PDRP bound with AMP and Hg2+
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 8 277 peg, dioxane
Crystal Properties Matthews coefficient Solvent content 5.04 75.58
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 175.514 α = 90 b = 175.514 β = 90 c = 175.514 γ = 90
Symmetry Space Group P 4 3 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315 2013-06-20 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON PHOTON FACTORY BEAMLINE BL-5A 1 Photon Factory BL-5A
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 3.4 50 100 0.092 0.092 55.5 217.2 13309 13309 3 3
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 3.4 48.68 12469 661 98.73 0.22404 0.22305 0.2286 0.24273 0.215 RANDOM 47.392
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 44.089 r_dihedral_angle_3_deg 20.201 r_dihedral_angle_4_deg 13.212 r_long_range_B_refined 8.748 r_long_range_B_other 8.748 r_dihedral_angle_1_deg 7.051 r_mcangle_other 5.175 r_mcangle_it 5.174 r_scangle_other 4.927 r_mcbond_it 2.943
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 44.089 r_dihedral_angle_3_deg 20.201 r_dihedral_angle_4_deg 13.212 r_long_range_B_refined 8.748 r_long_range_B_other 8.748 r_dihedral_angle_1_deg 7.051 r_mcangle_other 5.175 r_mcangle_it 5.174 r_scangle_other 4.927 r_mcbond_it 2.943 r_mcbond_other 2.937 r_scbond_it 2.921 r_scbond_other 2.92 r_angle_refined_deg 1.456 r_angle_other_deg 0.957 r_chiral_restr 0.071 r_bond_refined_d 0.01 r_gen_planes_refined 0.006 r_bond_other_d 0.002 r_gen_planes_other 0.002 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1973 Nucleic Acid Atoms Solvent Atoms 16 Heterogen Atoms 25
Software Software Software Name Purpose REFMAC refinement HKL-2000 data scaling HKL-2000 data collection HKL-2000 data reduction