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Kinase domain of cSrc in complex with RL235
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2OIQ
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 293 0.085-0.125 mM MES, 9-11.5 % PEG20000
Crystal Properties Matthews coefficient Solvent content 3.01 59.15
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 42.12 α = 78.65 b = 63.43 β = 89.55 c = 75.35 γ = 90.29
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL PSI PILATUS 6M 2011-06-27 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SLS BEAMLINE X10SA 1.00 SLS X10SA
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.3 45 97.1 0.065 0.078 15.35 3.48 33021 -3 41.021
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.3 2.4 95.7 0.344 0.413 4.41
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2OIQ 2.3 43.54 32030 991 97.16 0.216 0.2143 0.2198 0.2689 0.2689 RANDOM 40.712
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.7 -0.42 -0.24 -1.17 0.54 0.64
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.911 r_dihedral_angle_3_deg 17.168 r_dihedral_angle_4_deg 17.054 r_dihedral_angle_1_deg 6.766 r_mcangle_it 5.445 r_mcbond_it 3.592 r_mcbond_other 3.591 r_angle_refined_deg 1.934 r_angle_other_deg 1.186 r_chiral_restr 0.108
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.911 r_dihedral_angle_3_deg 17.168 r_dihedral_angle_4_deg 17.054 r_dihedral_angle_1_deg 6.766 r_mcangle_it 5.445 r_mcbond_it 3.592 r_mcbond_other 3.591 r_angle_refined_deg 1.934 r_angle_other_deg 1.186 r_chiral_restr 0.108 r_bond_refined_d 0.019 r_gen_planes_refined 0.01 r_bond_other_d 0.007 r_gen_planes_other 0.002
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4046 Nucleic Acid Atoms Solvent Atoms 98 Heterogen Atoms 76
Software Software Software Name Purpose XSCALE data scaling REFMAC refinement PDB_EXTRACT data extraction XDS data reduction PHASER phasing