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Crystal structure of human soluble Adenylyl Cyclase with the inhibitor bithionol
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 4CLK
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 6 277 0.1 M SODIUM ACETATE PH 4.8, 0.2 M TRI-SODIUM-CITRATE, 15% (W/V) PEG 4000, 10% (V/V) GLYCEROL
Crystal Properties Matthews coefficient Solvent content 2.63 53.25
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 99.403 α = 90 b = 99.403 β = 90 c = 99.978 γ = 120
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 6M COLLIMATOR 2014-12-10 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON BESSY BEAMLINE 14.1 0.918 BESSY 14.1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.24 86.23 100 0.0138 11.9 5.1 27051
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.24 2.37 99 0.0894 1.7 5.1
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 4CLK 2.24 86.23 25668 1383 99.74 0.1806 0.1773 0.1865 0.2437 0.1823 RANDOM 35.966
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.22 -0.11 -0.22 0.7
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.296 r_dihedral_angle_3_deg 16.216 r_dihedral_angle_4_deg 15.617 r_dihedral_angle_1_deg 7.642 r_mcangle_it 3.946 r_mcbond_it 2.402 r_mcbond_other 2.397 r_angle_refined_deg 2.177 r_angle_other_deg 1.134 r_chiral_restr 0.131
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.296 r_dihedral_angle_3_deg 16.216 r_dihedral_angle_4_deg 15.617 r_dihedral_angle_1_deg 7.642 r_mcangle_it 3.946 r_mcbond_it 2.402 r_mcbond_other 2.397 r_angle_refined_deg 2.177 r_angle_other_deg 1.134 r_chiral_restr 0.131 r_bond_refined_d 0.023 r_gen_planes_refined 0.01 r_bond_other_d 0.002 r_gen_planes_other 0.002
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3654 Nucleic Acid Atoms Solvent Atoms 214 Heterogen Atoms 71
Software Software Software Name Purpose MOSFLM data reduction XSCALE data scaling MOLREP phasing REFMAC refinement PDB_EXTRACT data extraction Coot model building XDS data reduction