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Crystal structure of maize PDRP bound with AMP
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7 277 PEG, Bicine and 2% Dioxane
Crystal Properties Matthews coefficient Solvent content 5.02 75.51
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 175.342 α = 90 b = 175.342 β = 90 c = 175.342 γ = 90
Symmetry Space Group P 4 3 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 6M Data is collected at SSRF beamline BL18U 2014-12-01 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SSRF BEAMLINE BL17B1 1 SSRF BL17B1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 3.2 50 100 0.075 0.075 59.2 54.1 15812 15812
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 3.2 3.26 100 0.536 49.6
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 3.2 50 14922 785 99.41 0.2205 0.21974 0.2239 0.23494 0.2396 RANDOM 57.346
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 43.228 r_dihedral_angle_3_deg 18.975 r_dihedral_angle_4_deg 17.836 r_long_range_B_refined 8.852 r_long_range_B_other 8.852 r_dihedral_angle_1_deg 6.776 r_mcangle_other 5.563 r_mcangle_it 5.562 r_scangle_other 4.583 r_mcbond_it 3.164
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 43.228 r_dihedral_angle_3_deg 18.975 r_dihedral_angle_4_deg 17.836 r_long_range_B_refined 8.852 r_long_range_B_other 8.852 r_dihedral_angle_1_deg 6.776 r_mcangle_other 5.563 r_mcangle_it 5.562 r_scangle_other 4.583 r_mcbond_it 3.164 r_mcbond_other 3.157 r_scbond_it 2.598 r_scbond_other 2.596 r_angle_refined_deg 1.443 r_angle_other_deg 0.959 r_chiral_restr 0.076 r_bond_refined_d 0.009 r_gen_planes_refined 0.005 r_bond_other_d 0.002 r_gen_planes_other 0.002 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2030 Nucleic Acid Atoms Solvent Atoms 32 Heterogen Atoms 24
Software Software Software Name Purpose REFMAC refinement HKL-2000 data scaling PHASER phasing