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HCV NS5B IN COMPLEX WITH LIGAND IDX17119-5
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details other in-house model
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION 297 NULL
Crystal Properties Matthews coefficient Solvent content 3.04 59.54
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 105.356 α = 90 b = 108.234 β = 90 c = 134.758 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315r 2010-04-12 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID29 0.97244 ESRF ID29
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.96 84.39 97.8 0.069 15.63 4.2 108468
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.96 2.03 95.6 0.615 4
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT in-house model 1.96 84.39 106423 2045 97.96 0.18906 0.18821 0.1961 0.23398 0.2395 RANDOM 37.918
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.4 0.29 -0.68
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.84 r_dihedral_angle_4_deg 18.131 r_dihedral_angle_3_deg 12.898 r_long_range_B_refined 8.195 r_long_range_B_other 8.048 r_scangle_other 6.163 r_dihedral_angle_1_deg 5.877 r_scbond_it 4.963 r_scbond_other 4.765 r_mcangle_it 3.998
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.84 r_dihedral_angle_4_deg 18.131 r_dihedral_angle_3_deg 12.898 r_long_range_B_refined 8.195 r_long_range_B_other 8.048 r_scangle_other 6.163 r_dihedral_angle_1_deg 5.877 r_scbond_it 4.963 r_scbond_other 4.765 r_mcangle_it 3.998 r_mcangle_other 3.998 r_mcbond_other 3.02 r_mcbond_it 3.019 r_angle_refined_deg 1.479 r_angle_other_deg 1.002 r_chiral_restr 0.087 r_bond_refined_d 0.011 r_gen_planes_refined 0.007 r_bond_other_d 0.005 r_gen_planes_other 0.002 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 8668 Nucleic Acid Atoms Solvent Atoms 844 Heterogen Atoms 237
Software Software Software Name Purpose XDS data reduction XSCALE data scaling REFMAC refinement MOLREP phasing