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Ligand binding domain 2 of Penicillium marneffei MP1 protein in complex with arachidonic acids
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 4.8 298 PEG 4000, Sodium Acetate, Ammonium Acetate
Crystal Properties Matthews coefficient Solvent content 2.14 42.54
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 58.502 α = 90 b = 100.052 β = 90.01 c = 99.05 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315r 2012-03-26 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SSRF BEAMLINE BL17U 0.9793 SSRF BL17U
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.45 50 99.2 0.087 13.8 3.9 100087
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.45 1.5 95.8 0.303 3.1 9574
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.45 44.99 95019 4995 98.96 0.1823 0.1812 0.1806 0.2039 0.2029 RANDOM 18.396
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.24 0.02 0.14 0.1
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.813 r_dihedral_angle_4_deg 14.742 r_dihedral_angle_3_deg 12.754 r_dihedral_angle_1_deg 3.503 r_angle_other_deg 1.964 r_angle_refined_deg 1.673 r_mcangle_it 1.031 r_mcbond_it 0.639 r_mcbond_other 0.636 r_chiral_restr 0.09
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.813 r_dihedral_angle_4_deg 14.742 r_dihedral_angle_3_deg 12.754 r_dihedral_angle_1_deg 3.503 r_angle_other_deg 1.964 r_angle_refined_deg 1.673 r_mcangle_it 1.031 r_mcbond_it 0.639 r_mcbond_other 0.636 r_chiral_restr 0.09 r_bond_refined_d 0.013 r_bond_other_d 0.012 r_gen_planes_refined 0.009 r_gen_planes_other 0.007
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4741 Nucleic Acid Atoms Solvent Atoms 657 Heterogen Atoms 144
Software Software Software Name Purpose REFMAC refinement DENZO data collection SCALEPACK data scaling PHASER phasing PDB_EXTRACT data extraction Coot model building Blu-Ice data collection