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Crystal structure of domains AC3-AC5 of yeast acetyl-CoA carboxylase
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 7.5 293 80 mM HEPES (pH 7.5), 4 % (v/v) MPD, 8 mM sodium citrate, 4% (v/v) glycerol, and 40mM NDSB-201
Crystal Properties Matthews coefficient Solvent content 2.74 55.14
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 56.849 α = 90 b = 93.285 β = 100.62 c = 111.144 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315 2013-09-24 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON NSLS BEAMLINE X29A 0.979 NSLS X29A
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 3.2 50 99.9 0.075 0.08 0.029 11.1 7.6 19141
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 3.2 3.31 100 0.405 0.434 0.156 0.965 7.6 1892
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 3.19 42.9 18134 980 99.8 0.2362 0.2335 0.2327 0.2873 0.2797 RANDOM 79.69
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.64 0.41 0.46 0.03
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.519 r_dihedral_angle_4_deg 19.448 r_dihedral_angle_3_deg 16.888 r_mcangle_it 8.417 r_dihedral_angle_1_deg 6.836 r_mcbond_it 5.276 r_mcbond_other 5.275 r_angle_refined_deg 1.439 r_angle_other_deg 0.77 r_chiral_restr 0.069
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.519 r_dihedral_angle_4_deg 19.448 r_dihedral_angle_3_deg 16.888 r_mcangle_it 8.417 r_dihedral_angle_1_deg 6.836 r_mcbond_it 5.276 r_mcbond_other 5.275 r_angle_refined_deg 1.439 r_angle_other_deg 0.77 r_chiral_restr 0.069 r_bond_refined_d 0.01 r_gen_planes_refined 0.006 r_bond_other_d 0.004 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 6353 Nucleic Acid Atoms Solvent Atoms Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement DENZO data reduction SCALEPACK data scaling SOLVE phasing RESOLVE phasing Coot model building PDB_EXTRACT data extraction