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Structure of the penicillin-binding protein PonA1 from Mycobacterium Tuberculosis
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 7 273 0.2 M Lithium chloride, 0.1 M HEPES, 20 % PEG6000
Crystal Properties Matthews coefficient Solvent content 1.81 31.91
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 46.006 α = 90 b = 333.314 β = 108.37 c = 47.528 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 300 mm CCD 2014-07-17 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 21-ID-G 0.987857 APS 21-ID-G
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.8 30 96.8 0.07 30.3 4.9 120754
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.8 1.83 97.6 0.53 2.4 4.1
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 1.8 30 114638 6020 96.58 0.16302 0.16083 0.1628 0.20523 0.2072 RANDOM 31.899
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1.4 -0.62 -1.48 0.41
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.51 r_dihedral_angle_4_deg 15.423 r_dihedral_angle_3_deg 13.274 r_long_range_B_refined 6.232 r_long_range_B_other 6.091 r_dihedral_angle_1_deg 6.042 r_scangle_other 1.962 r_mcangle_it 1.731 r_mcangle_other 1.731 r_angle_refined_deg 1.645
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.51 r_dihedral_angle_4_deg 15.423 r_dihedral_angle_3_deg 13.274 r_long_range_B_refined 6.232 r_long_range_B_other 6.091 r_dihedral_angle_1_deg 6.042 r_scangle_other 1.962 r_mcangle_it 1.731 r_mcangle_other 1.731 r_angle_refined_deg 1.645 r_scbond_it 1.215 r_scbond_other 1.197 r_mcbond_it 1.012 r_mcbond_other 1.011 r_angle_other_deg 0.989 r_chiral_restr 0.1 r_bond_refined_d 0.014 r_gen_planes_refined 0.008 r_bond_other_d 0.002 r_gen_planes_other 0.002 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 11194 Nucleic Acid Atoms Solvent Atoms 962 Heterogen Atoms 25
Software Software Software Name Purpose REFMAC refinement HKL-3000 data reduction HKL-3000 data scaling PHENIX phasing