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Crystal structure of Uncharacterised protein Q1R1X2 from Escherichia coli UTI89
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 6.5 277 60 mM Magnesium chloride hexahydrate, 60 mM Calcium chloride dihydrate, 0.1 M imidazole, 0.1 M MES monohydrate, pH 6.5, 12.5% MPD, 12.5 % PEG 1000, 12.5% PEG 3350
Crystal Properties Matthews coefficient Solvent content 2.35 47.8
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 46.86 α = 90 b = 48.16 β = 90 c = 80.22 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 6M-F 2013-03-13 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON DIAMOND BEAMLINE I04 0.9795 Diamond I04
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.26 41.34 98.93 0.14 13 13.6 38126
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.35 1.385 89.4 0.462 2.5 4.3
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 1.35 41.29 38126 2073 98.93 0.11632 0.11511 0.1141 0.13846 0.137 RANDOM 11.489
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.21 -0.05 0.26
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 39.542 r_sphericity_free 32.217 r_dihedral_angle_3_deg 10.984 r_sphericity_bonded 8.593 r_dihedral_angle_4_deg 8.378 r_rigid_bond_restr 4.537 r_dihedral_angle_1_deg 4.319 r_long_range_B_refined 3.618 r_long_range_B_other 2.053 r_angle_refined_deg 1.496
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 39.542 r_sphericity_free 32.217 r_dihedral_angle_3_deg 10.984 r_sphericity_bonded 8.593 r_dihedral_angle_4_deg 8.378 r_rigid_bond_restr 4.537 r_dihedral_angle_1_deg 4.319 r_long_range_B_refined 3.618 r_long_range_B_other 2.053 r_angle_refined_deg 1.496 r_scangle_other 1.431 r_mcangle_other 1.157 r_mcangle_it 1.15 r_scbond_it 1.125 r_scbond_other 1.125 r_angle_other_deg 0.972 r_mcbond_it 0.833 r_mcbond_other 0.798 r_chiral_restr 0.093 r_bond_refined_d 0.011 r_gen_planes_refined 0.008 r_bond_other_d 0.007 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1378 Nucleic Acid Atoms Solvent Atoms 354 Heterogen Atoms 12
Software Software Software Name Purpose REFMAC refinement PHENIX phasing xia2 data scaling xia2 data reduction