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Crystal Structure of the MTERF1 R162A substitution bound to the termination sequence.
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 3MVA
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 8 293 0.1M Sodium Acetate, 0.1M Tris HCl, 15.5% PEG4000
Crystal Properties Matthews coefficient Solvent content 3.16 61.06
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 88.217 α = 90 b = 91.161 β = 90 c = 159.103 γ = 90
Symmetry Space Group C 2 2 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315r 2009-10-12 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON NSLS BEAMLINE X9A 1.075 NSLS X9A
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.615 79.55 99.9 0.066 25.4 7.3 19776
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.615 2.624 100 0.807 2.8 7.4
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 3MVA 2.62 79.55 18744 1011 99.94 0.2164 0.2142 0.2187 0.2586 0.2616 RANDOM 53.18
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.01 0.01 0.01
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.236 r_dihedral_angle_4_deg 17.619 r_dihedral_angle_3_deg 16.424 r_mcangle_it 5.848 r_dihedral_angle_1_deg 5.694 r_mcbond_it 3.899 r_mcbond_other 3.896 r_angle_refined_deg 1.689 r_angle_other_deg 1.016 r_chiral_restr 0.088
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.236 r_dihedral_angle_4_deg 17.619 r_dihedral_angle_3_deg 16.424 r_mcangle_it 5.848 r_dihedral_angle_1_deg 5.694 r_mcbond_it 3.899 r_mcbond_other 3.896 r_angle_refined_deg 1.689 r_angle_other_deg 1.016 r_chiral_restr 0.088 r_bond_refined_d 0.012 r_gen_planes_refined 0.008 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2597 Nucleic Acid Atoms 896 Solvent Atoms 8 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement Aimless data scaling PDB_EXTRACT data extraction XDS data reduction